miEAA Command Line Interface and API

The miRNA Enrichment Analysis and Annotation Tool (miEAA) facilitates the functional analysis of miRNA sets. This package provides a miEAA REST API wrapper and command line interface. As such, a stable internet connection is required to utilize these tools.

To learn more about miEAA or to utilize our online interface, please visit our web server.

All miEAA tools are provided and hosted by the Chair for Clinical Bioinformatics at Saarland University.

Source code is available on GitHub.

Documentation is available on Read the Docs.

Users can execute miEAA commands directly from the command line:

$ mieaa -h

A REST API is also provided for scripting purposes:

from mieaa import API

mieaa_api = API()

Complete examples for both Python and R (using reticulate) are available under Examples.

• Installation
  • Python Package Index
  • Conda
• API Wrapper
  • mieaa
    • mieaa.API
    • mieaa.API.convert_mirbase
    • mieaa.API.to_precursor
    • mieaa.API.to_mirna
    • mieaa.API.get_enrichment_categories
    • mieaa.API.get_enrichment_parameters
    • mieaa.API.get_gui_url
    • mieaa.API.get_progress
    • mieaa.API.get_results
    • mieaa.API.new_session
    • mieaa.API.open_gui
    • mieaa.API.run_gsea
    • mieaa.API.run_ora
    • mieaa.API.save_enrichment_results
  • Examples
    • Python
    • R
• Command Line Interface
  • Subcommands
    • to_precursor
    • to_mirna
    • convert_mirbase
    • gsea
    • ora
    • open
• Links
• License