mieaa.API.get_enrichment_categories

API.get_enrichment_categories(mirna_type: str, species: str, mode='all', with_suffix=False) → dict

Get possible enrichment categories

Parameters:
  • mirna_type (str) –
    • precursor - Precursor to a mature miRNA, e.g. hsa-mir-550b-1
    • mirna - Mature miRNA, e.g. hsa-miR-199a-5p
  • species (str) –
    • hsa - Homo sapiens
    • mmu - Mus musculus
    • rno - Rattus norvegicus
    • ath - Arabidopsis thaliana
    • bta - Bos taurus
    • cel - Caenorhabditis elegans
    • dme - Drosophila melanogaster
    • dre - Danio rerio
    • gga - Gallus gallus
    • ssc - Sus scrofa
  • mode (str) –
    • all - include both default and expert categories
    • default - only show default (non-expert) categories
    • expert - only show expert categories
  • with_suffix (bool, default=False) – whether to include ‘_precursor’ or ‘_mature’ at end of category name
Returns:

Keys are categories and values are their descriptions
Return type:

dict